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ATTENTION ⚠️

In observance of the holiday, Juneteenth, Agilent CrossLab/iLab Operations Software Support Help Desk will be closed during U.S. hours on Thursday, June 19th, 2025. We will resume regular U.S. support hours on Friday, June 20th, 2025. EU and APAC Support will remain open during this time. For urgent matters, please add "Urgent" to the ticket/email subject or press "1" when prompted to escalate a call on the iLab Support phone, and we will prioritize those requests first.

Microscopy

Overview of Services

 

The Microscopy Shared Resources provides ready access to up-to-date instrumentation, each instrument with multiple capabilities, to meet the diverse type of samples that need to be examined by Researchers in their current work and as their projects evolve. Fluorescence microscopy for imaging genetically encoded fluorescent proteins constitute the biggest category of instruments. The AxioImager Z1 is an upright fluorescent microscopes is available for standard IF labeling on glass slides. Two LSM spot scan confocals are suited best for imaging thick samples on fixed tissue samples.The Zeiss LSM780 spot scanning confocal microscope to instrument has the most sensitive detection system (GAsP) with photon counting capabilities.The Perkin Elmer spinning disk confocal is especially suited for long term time lapse imaging of cancer cells and FRAP analysis and it also has bright field DIC optics. The Zeiss Observer is an inverted microscope that is configured for bright field color microscopy for imaging paraffin sections (H&E) from mouse cancer models. The Zeiss Observer also has phase contrast, DIC optics and widefield fluorescence with live cell imaging in all those imaging modes. For live imaging of fluorescently encoded cells, the two General Electric DeltaVision microscopes have deconvolution capability. The Microscopy Shared Resource also has a dedicated super-resolution microscope that reaches resolutions of 100nm. Beyond that resolution, Cancer researchers submit samples for various types of transmission electron microscopy examination with the Hitach HT7000 (plastic embedding, thin sectioning, immunogold labeling, negative staining). The transmission electron microscopy service is typically completed entirely by the lab staff with digital images uploaded to shared servers. With the exception of the OMX microscope, all the other instruments are operated by both students, post-docs and Investigators with training and daily assistance for the lab staff. The Microscopy Shared Resource provides training on software for data image analysis that are available on 2 workstations and remotely by a license server. 

 

Microscopes in Shared Resource

 

  • Zeiss AxioImager.Z1 motorized upright fluorescence microscope for examining fixed samples.
  • Zeiss Observer inverted fluorescence microscope equipped with a fully automated stage for image tiling/mosaics, time-lapse imaging of cultured cells, and brightfield imaging using phase-contrast or Nomarski optics.
  • Zeiss LSM710 confocal laser scanning microscope with live cell imaging capabilities (time-lapse and photokinesis) and fully automated stage for image tiling, 8 laser lines (405, 440, 458, 488, 514, 561, 594, 633nm), and advanced spectral separation functions.
  • Zeiss LSM780 confocal laser scanning microscope with live cell imaging capabilities (time-lapse and photokinesis) and fully automated stage for image tiling, 6 laser lines (405, 458, 488, 514, 561, 633nm), and advanced spectral separation, GASP Detector with photon counting functions.
  • Perkin-Elmer UltraVIEW VoX high speed spinning disk (Yokogawa® CSU-X1) laser confocal microscope with live cell imaging capability, time-lapse microscopy, photokinesis, multi-position image acquisition, 6 laser lines (405, 440, 488, 514, 561 and 640nm).
  • Applied Precision DeltaVision wide-field fluorescence microscope for fixed or live cell imaging and deconvolution.
  • Applied Precision OMX (Optical Microscope eXperimental) super-resolution microscope, 5 laser lines (405, 457, 488, 514, and 594nm).
  • Hitachi H-7000 transmission electron microscope. 
  • Leica SP8 Confocal Microscope confocal laser scanning microscope with 4 laser lines (405, 488, 555, 633 nm)

 

 

Leadership

Erika Tse-Luen Wee, Director

516-367-5079

wee@cshl.edu

 

David Spector, Faculty Head

spector@cshl.edu

 

 

 

Location and hours of operation

Hours Location

 9-5 Monday-Friday

Open 24/7 for trained users  

 Hershey Building (Main entrance -Room 130)

James Building (James 101, 104)

 

Links and Resources

  1. Zeiss LSM Zen LE (PC only)
  2. Perkin Elmer Volocity: (PC and Mac) / Can also be used to view Zeiss files
  3. Leica LAS (PC only)
  4. Zeiss Axiovision LE (PC only)
  5. Image J Users Guide
  6. Perkin-Elmer Support